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Structure-Based Engineering of Phanerochaete chrysosporium Alcohol Oxidase for Enhanced Oxidative Power toward Glycerol.

Identifieur interne : 000100 ( Main/Exploration ); précédent : 000099; suivant : 000101

Structure-Based Engineering of Phanerochaete chrysosporium Alcohol Oxidase for Enhanced Oxidative Power toward Glycerol.

Auteurs : Quoc-Thai Nguyen [Pays-Bas, Italie, Viêt Nam] ; Elvira Romero [Pays-Bas] ; Willem P. Dijkman [Pays-Bas] ; Suzan Pantaroto De Vasconcellos [Pays-Bas, Brésil] ; Claudia Binda [Italie] ; Andrea Mattevi [Italie] ; Marco W. Fraaije [Pays-Bas]

Source :

RBID : pubmed:30272958

Descripteurs français

English descriptors

Abstract

Glycerol is a major byproduct of biodiesel production, and enzymes that oxidize this compound have been long sought after. The recently described alcohol oxidase from the white-rot basidiomycete Phanerochaete chrysosporium (PcAOX) was reported to feature very mild activity on glycerol. Here, we describe the comprehensive structural and biochemical characterization of this enzyme. PcAOX was expressed in Escherichia coli in high yields and displayed high thermostability. Steady-state kinetics revealed that PcAOX is highly active toward methanol, ethanol, and 1-propanol ( kcat = 18, 19, and 11 s-1, respectively), but showed very limited activity toward glycerol ( kobs = 0.2 s-1 at 2 M substrate). The crystal structure of the homo-octameric PcAOX was determined at a resolution of 2.6 Å. The catalytic center is a remarkable solvent-inaccessible cavity located at the re side of the flavin cofactor. Its small size explains the observed preference for methanol and ethanol as best substrates. These findings led us to design several cavity-enlarging mutants with significantly improved activity toward glycerol. Among them, the F101S variant had a high kcat value of 3 s-1, retaining a high degree of thermostability. The crystal structure of F101S PcAOX was solved, confirming the site of mutation and the larger substrate-binding pocket. Our data demonstrate that PcAOX is a very promising enzyme for glycerol biotransformation.

DOI: 10.1021/acs.biochem.8b00918
PubMed: 30272958
PubMed Central: PMC6210165


Affiliations:


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Le document en format XML

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<term>Alcohol Oxidoreductases (chemistry)</term>
<term>Alcohol Oxidoreductases (genetics)</term>
<term>Alcohol Oxidoreductases (metabolism)</term>
<term>Catalysis (MeSH)</term>
<term>Crystallography, X-Ray (MeSH)</term>
<term>Glycerol (metabolism)</term>
<term>Models, Molecular (MeSH)</term>
<term>Molecular Structure (MeSH)</term>
<term>Mutagenesis, Site-Directed (MeSH)</term>
<term>Mutation (MeSH)</term>
<term>Phanerochaete (enzymology)</term>
<term>Protein Conformation (MeSH)</term>
<term>Protein Engineering (methods)</term>
<term>Substrate Specificity (MeSH)</term>
</keywords>
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<term>Alcohol oxidoreductases (composition chimique)</term>
<term>Alcohol oxidoreductases (génétique)</term>
<term>Alcohol oxidoreductases (métabolisme)</term>
<term>Catalyse (MeSH)</term>
<term>Conformation des protéines (MeSH)</term>
<term>Cristallographie aux rayons X (MeSH)</term>
<term>Glycérol (métabolisme)</term>
<term>Ingénierie des protéines (méthodes)</term>
<term>Modèles moléculaires (MeSH)</term>
<term>Mutagenèse dirigée (MeSH)</term>
<term>Mutation (MeSH)</term>
<term>Phanerochaete (enzymologie)</term>
<term>Spécificité du substrat (MeSH)</term>
<term>Structure moléculaire (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en">
<term>Alcohol Oxidoreductases</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>Alcohol Oxidoreductases</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en">
<term>Alcohol Oxidoreductases</term>
<term>Glycerol</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr">
<term>Alcohol oxidoreductases</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr">
<term>Phanerochaete</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymology" xml:lang="en">
<term>Phanerochaete</term>
</keywords>
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<term>Alcohol oxidoreductases</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en">
<term>Protein Engineering</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr">
<term>Alcohol oxidoreductases</term>
<term>Glycérol</term>
</keywords>
<keywords scheme="MESH" qualifier="méthodes" xml:lang="fr">
<term>Ingénierie des protéines</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Catalysis</term>
<term>Crystallography, X-Ray</term>
<term>Models, Molecular</term>
<term>Molecular Structure</term>
<term>Mutagenesis, Site-Directed</term>
<term>Mutation</term>
<term>Protein Conformation</term>
<term>Substrate Specificity</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Catalyse</term>
<term>Conformation des protéines</term>
<term>Cristallographie aux rayons X</term>
<term>Modèles moléculaires</term>
<term>Mutagenèse dirigée</term>
<term>Mutation</term>
<term>Spécificité du substrat</term>
<term>Structure moléculaire</term>
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<div type="abstract" xml:lang="en">Glycerol is a major byproduct of biodiesel production, and enzymes that oxidize this compound have been long sought after. The recently described alcohol oxidase from the white-rot basidiomycete Phanerochaete chrysosporium (PcAOX) was reported to feature very mild activity on glycerol. Here, we describe the comprehensive structural and biochemical characterization of this enzyme. PcAOX was expressed in Escherichia coli in high yields and displayed high thermostability. Steady-state kinetics revealed that PcAOX is highly active toward methanol, ethanol, and 1-propanol ( k
<sub>cat</sub>
= 18, 19, and 11 s
<sup>-1</sup>
, respectively), but showed very limited activity toward glycerol ( k
<sub>obs</sub>
= 0.2 s
<sup>-1</sup>
at 2 M substrate). The crystal structure of the homo-octameric PcAOX was determined at a resolution of 2.6 Å. The catalytic center is a remarkable solvent-inaccessible cavity located at the re side of the flavin cofactor. Its small size explains the observed preference for methanol and ethanol as best substrates. These findings led us to design several cavity-enlarging mutants with significantly improved activity toward glycerol. Among them, the F101S variant had a high k
<sub>cat</sub>
value of 3 s
<sup>-1</sup>
, retaining a high degree of thermostability. The crystal structure of F101S PcAOX was solved, confirming the site of mutation and the larger substrate-binding pocket. Our data demonstrate that PcAOX is a very promising enzyme for glycerol biotransformation.</div>
</front>
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<Abstract>
<AbstractText>Glycerol is a major byproduct of biodiesel production, and enzymes that oxidize this compound have been long sought after. The recently described alcohol oxidase from the white-rot basidiomycete Phanerochaete chrysosporium (PcAOX) was reported to feature very mild activity on glycerol. Here, we describe the comprehensive structural and biochemical characterization of this enzyme. PcAOX was expressed in Escherichia coli in high yields and displayed high thermostability. Steady-state kinetics revealed that PcAOX is highly active toward methanol, ethanol, and 1-propanol ( k
<sub>cat</sub>
= 18, 19, and 11 s
<sup>-1</sup>
, respectively), but showed very limited activity toward glycerol ( k
<sub>obs</sub>
= 0.2 s
<sup>-1</sup>
at 2 M substrate). The crystal structure of the homo-octameric PcAOX was determined at a resolution of 2.6 Å. The catalytic center is a remarkable solvent-inaccessible cavity located at the re side of the flavin cofactor. Its small size explains the observed preference for methanol and ethanol as best substrates. These findings led us to design several cavity-enlarging mutants with significantly improved activity toward glycerol. Among them, the F101S variant had a high k
<sub>cat</sub>
value of 3 s
<sup>-1</sup>
, retaining a high degree of thermostability. The crystal structure of F101S PcAOX was solved, confirming the site of mutation and the larger substrate-binding pocket. Our data demonstrate that PcAOX is a very promising enzyme for glycerol biotransformation.</AbstractText>
</Abstract>
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<Affiliation>Molecular Enzymology Group, Groningen Biomolecular Sciences and Biotechnology Institute , University of Groningen , Nijenborgh 4 , 9747 AG Groningen , The Netherlands.</Affiliation>
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<AffiliationInfo>
<Affiliation>Scuola Universitaria Superiore IUSS Pavia , Piazza della Vittoria 15 , 27100 Pavia , Italy.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Faculty of Pharmacy , University of Medicine and Pharmacy at Ho Chi Minh City , 41 Dinh Tien Hoang Street, Ben Nghe Ward, District 1 , Ho Chi Minh City , Vietnam.</Affiliation>
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<ForeName>Elvira</ForeName>
<Initials>E</Initials>
<AffiliationInfo>
<Affiliation>Molecular Enzymology Group, Groningen Biomolecular Sciences and Biotechnology Institute , University of Groningen , Nijenborgh 4 , 9747 AG Groningen , The Netherlands.</Affiliation>
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<ForeName>Suzan Pantaroto</ForeName>
<Initials>SP</Initials>
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<Affiliation>Molecular Enzymology Group, Groningen Biomolecular Sciences and Biotechnology Institute , University of Groningen , Nijenborgh 4 , 9747 AG Groningen , The Netherlands.</Affiliation>
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<AffiliationInfo>
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